Search for sequences based on environmental metadata

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Summary of search results

Target gene
Target gene Count
16S ssu rRNA 14145
16s ssu rRNA 89
18S ssu rRNA 5393
COI 362
ITS 814
mRNA 33
metagenome 463
particulate methane monooxygenase 1
ureC 38
Target subfragment
Target subfragment Count
COI1-COI2 362
ITS 405
ITS1 270
ITS1-4 39
ITS1-5.8S-ITS2 36
ITS2 64
V2-V3 32
V3-V4 1071
V4 794
V5-V6 36
V6 20
V9 42
na 12
subunit A (pmoA) 1
v1-v3 1006
v3 32
v3-v4 1512
v3-v5 46
v4 3397
v4-v5 31
v4-v5(Bacteria-Archaea);v9(Eukaryota) 9
v5-v6 30
v5-v7 28
v6 4971
v7 1072
v7-v8 229
v9 1245
Run type
Run type Count
250bp paired end 31
250bp-PE 618
300 bp paired end 1270
300bp 305
300bp-PE 973
Paired end sequencing with plasmid primers 55
Sanger 176
na 12
no 15
paired 1457
paired-end 1166
single 789
yes 20
Sampling Protocol
Sampling protocol Count
Rete 2
diving 16
dredge 331
pump sample 14
tissue biopsy 525
manual 142
Uwitec multicorer 300
Coffee can on a pole 48
seawater intake 2937
SCUBA 1247
dredge 7
rosette sampler 221
Scoop 74
Niskin 1088
Carotatore 48
50_mL sterile tubes 90
MOCNESS 972
Niskin bottle 180
Niskin rosette 20
CTD Rosette/Niskin bottle 254
Event year
Year Count
1913 30
1937 12
1988 6
1990 77
1995 94
1997 658
1998 6
2000 1
2002 29
2003 130
2004 59
2005 556
2006 48
2007 2780
2008 3117
2009 793
2010 1761
2011 2438
2012 1246
2013 2677
2014 3456
2015 1425
2016 23685
2017 170
2018 12
2019 62
42258 3
42267 3
Event month
Month Count
1 10158
2 3354
3 1961
4 541
5 337
6 8408
7 3137
8 5560
9 817
10 607
11 1814
12 4439
2009 108

301 - 320 of 46,732 results

Variable Text value Numeric value Unit Sequences accession number Bioproject Project
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384482;SRS1734447 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384480;SRS1734445 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384483;SRS1734448 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384478;SRS1734443 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4779885;SRS1770840 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4779858;SRS1770829 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4779862;SRS1770831 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384476;SRS1734441 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384477;SRS1734442 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384479;SRS1734444 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384484;SRS1734449 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384473;SRS1734437 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384472;SRS1734435 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384475;SRS1734440 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384470;SRS1734433 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384469;SRS1734439 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384471;SRS1734436 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4779852;SRS1770827 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384466;SRS1734428 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
additional_pcr_cond_with_illumina_adaptors initial denaturation:94degC_3min;denaturation:94degC_30sec;annealing:60degC_45sec;elongation:72degC_1min;final elongation:72degC_10 min;5 cycles Alphanumeric SRR4384465;SRS1734429 PRJNA344476 Western Antarctic Peninsula Bacteria (Mesocosm exp.)
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Map attribution: Tiles © Esri — Source: Esri, DeLorme, NAVTEQ, USGS, Intermap, iPC, NRCAN, Esri Japan, METI, Esri China (Hong Kong), Esri (Thailand), TomTom, 2012