Microbiome (Bacteria, Archaea and fungi) from University Valley Permafrost cores (Antarctica)

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Resource URL https://ipt.biodiversity.aq/resource?r=microbiome_university_valley_permafrost_antarctica
Last updated Dec. 15, 2020
Project contact Goordial Jacqueline
Abstract Amplicon sequencing dataset (Bacteria and Archaea based on 16S ssu rRNA gene, Fungi and other eukaryotes, based on the ITS marker) of microorganisms in permafrost samples (two cores with three different depths) taken in University Valley, Antarctica.
Rights http://creativecommons.org/licenses/by/4.0/legalcode
Sequence data PRJNA240343
Citation Goordial J, Davila A, Lacelle D, Pollard W, Marinova M, Greer C, DiRuggiero J, McKay C, Whyte L (2019): Microbiome (Bacteria, Archaea and fungi) from University Valley Permafrost cores (Antarctica). v1.1. SCAR - Microbial Antarctic Resource System. Dataset/Metadata. https://ipt.biodiversity.aq/resource?r=microbiome_university_valley_permafrost_antarctica&v=1.1 (Available: Polar 'Omics Links to Antarctic, Arctic and Alpine Research. Antarctic Biodiversity Portal. Scientific Committee for Antarctic Research. www.biodiversity.aq/pola3r. Accessed: 2021-08-04)

Map attribution: Tiles © Esri — Source: Esri, DeLorme, NAVTEQ, USGS, Intermap, iPC, NRCAN, Esri Japan, METI, Esri China (Hong Kong), Esri (Thailand), TomTom, 2012

Summary statistics
Sampling event records 21
Sample records 21
Sequence metadata records 21
Environmental metadata records 117
Sampling events
Year Records
2009 21
Month Records
12 21
Sample metadata
Sample Metadata Records
Location Amundsen Sea 13
Location Antarctica:Miers Valley 1
Location Beaufort Sea 6
Environmental biome ocean biome [ENVO:01000048] 20
Environmental biome polar desert biome [ENVO:01000186] 1
Sequence metadata
Sequence metadata Records
Target gene 16S ssu rRNA 14
Target gene ITS 7
Target subfragment ITS1-4 7
Additional metadata
Variable Records
depth 21
elev 21
gravimetric_moisture 15
organism_count 15
ph 15
tot_carb 15
tot_nitro 15