Synoicum_adareanum_microbiome

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Resource URL https://ipt.biodiversity.aq/resource?r=synoicum_adareanum_microbiome
Source file(s) polaaar/project_files/Murray_Synoicum_PRJNA597083_PRJNA602715.csv
Last updated Dec. 17, 2020
Project contact Murray Alison
Abstract None
Rights http://creativecommons.org/publicdomain/zero/1.0/legalcode
Sequence data PRJNA597083
PRJNA602715
Citation Baker BJ. 2020. Synoicum adareanum sampling u/w video Mar 2011 Palmer Station Antarctica doi:10.5061/dryad.gxd2547gw, Dryad Data. (Available: Polar 'Omics Links to Antarctic, Arctic and Alpine Research. Antarctic Biodiversity Portal. Scientific Committee for Antarctic Research. www.biodiversity.aq/pola3r. Accessed: 2021-10-20)

Map attribution: Tiles © Esri — Source: Esri, DeLorme, NAVTEQ, USGS, Intermap, iPC, NRCAN, Esri Japan, METI, Esri China (Hong Kong), Esri (Thailand), TomTom, 2012

Summary statistics
Sampling event records 93
Sample records 93
Sequence metadata records 93
Environmental metadata records 1446
Sampling events
Year Records
2004 1
2007 15
2008 14
2011 63
Month Records
2 3
3 47
4 18
5 15
7 2
8 3
9 4
Sample metadata
Sample Metadata Records
Location Amundsen Sea 13
Location Antarctica 55
Location Antarctica:Bratina Island 7
Location Antarctica:Miers Valley 3
Location Beaufort Sea 6
Location South Shetland Islands:Deception Island 8
Environmental biome ocean biome [ENVO:01000048] 20
Environmental biome polar desert biome [ENVO:01000186] 73
Sequence metadata
Sequence metadata Records
Target gene 16S ssu rRNA 93
Target subfragment V3-V4 63
Target subfragment V4 14
Run type 300 bp paired end 77
Run type Sanger 16
Additional metadata
Variable Records
barcode_3 77
barcode_5 77
biotic_relationship 79
chlorophyll 5
decimallatitude 93
decimallongitude 93
depth 77
diss_org_carb 8
host_life_stage 79
host_taxid 79
isol_growth_condt 16
no2_plus_no3 11
oxy_stat_samp 16
pala_avg_peak_area_per_g_host_tissue 63
pala_avg_percentage_peak_area 63
pala_std_deviation_avg_peak_area_per_g_host_tissue 63
pala_std_deviation_of_avg_percentage_peak_area 63
part_org_carb 4
part_org_carb_part_org_nitro_ratio 4
part_org_nitro 4
phosphate 11
rel_to_oxygen 93
salinity 2
samp_size 77
samp_store_temp 79
samp_vol_we_dna_ext 77
samplingProtocol 93
silicate 11
specific_host 16
temp 13